Scaffold FwDRAFT

Basic Information
Taxon OID	3300000882 Open in IMG/M
Scaffold ID	FwDRAFT_10010206 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Columbia River
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000882 Open in IMG/M

Scaffold ID

FwDRAFT_10010206 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Columbia River

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58589
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (31.17%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

58589

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (31.17%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River freshwater tidal region
Coordinates	Lat. (^o)	46.18	Long. (^o)	-123.18	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River freshwater tidal region

Coordinates

Lat. (^o)

46.18

Long. (^o)

-123.18

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038243	Metagenome	166	Y
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097332	Metagenome	104	N
F099280	Metagenome / Metatranscriptome	103	N
F100402	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1001020625	F097332	N/A	MTREYAQRKSNEDYMCGRISKEEWDFQFEELGNVRIWSKDGKIHQLKEEHERLRPDNGTTKQN*
FwDRAFT_1001020626	F084229	GGA	MIEPNIAQKAISFVRSAAAFVRAGMPIRNKEQIEERLLICNQCVHYDPTAFSGAGKCGVCGCNMEIKVVMDTERCPLDHWA*
FwDRAFT_1001020635	F068824	N/A	MNWTTEQLKEKGYTLAPDGHYYYHANKFNSPARRLPDTLTQHAPKRSLVKIPKAKEPSEDCTAKCNPLYTLSITRYSTKTLDVDNLAGGSKPLIDQIRYSKLIRDDNPESVEITFSQVKVKTQAEQRTEVRITKA*
FwDRAFT_1001020639	F080908	AGGA	MSEPHYASEVERLKECDKDYRSIAAQLSVFCSAAIFALRAANKDLEDAQVKCEIIPDPFAEQAIDDMFAQYLESLRDYPEIMAIALKFIQQSR*
FwDRAFT_1001020651	F081331	AGAAGG	MNELNFDTLTGNGWKQFKDFLQNSDVAFYKTFAGHEECRCNEGKKKQVEVYVYDHRKHGTTGVGYDVKCTGELPDGTWLELKSHGLNQDHVDPKAQELLSIWDWSVKNNLTRSKN*
FwDRAFT_1001020658	F100402	N/A	MATKRNNHPAFPVPHFGGDAKTGSVKPNSGMGMRDYFAAAALRGYRASEEFSGELPEIVAELSFVDADAMLIEREKQSFNQ*
FwDRAFT_1001020669	F038243	N/A	MRSKIEYKLTPNGTNEFLELVDFAEEFDHKIIEHPNINVYAHYRDGVLFGYSDHVYMPIVYPAFHPKHTRPQDVIQVMSDWKAHSQLSNSPGYIGVPLINERPNFTNEIIKKLGLTPLKREVYSLT*
FwDRAFT_1001020674	F099280	AGGA	MAKPTTEAAMPEPEPEMGMDLPEDMSGIASPMAEEGAVTISVAKSKFDELHGIAMQLAGIIDALAADVEGQKAMTESLEGQVPAAENAAMASEEDFLNSIASEGSMR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold FwDRAFT_10010206

Overview

Ecosystem & Geography

Associated Families

Sequences