NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FwDRAFT_10019514

Scaffold FwDRAFT_10019514


Overview

Basic Information
Taxon OID3300000882 Open in IMG/M
Scaffold IDFwDRAFT_10019514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Columbia River
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1304
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River freshwater tidal region
CoordinatesLat. (o)46.18Long. (o)-123.18Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F009266Metagenome / Metatranscriptome320Y
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
FwDRAFT_100195141F009266AGGAMTDKERKILDKEIQYLCEQQDRVKAIREYTGINPGYTFLKEVETIESLYKSVLESRKYDKSTYFSAATSGWYVVYLRDKKTYKKDEKFKIKIFHTFVWTDN
FwDRAFT_100195142F002398GGAMIALISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDIPDFPRVNVIEKSKFDFFGYLDTIGIEHTQVGSYYFFNRKPK*
FwDRAFT_100195145F019834GAGGMKELKFTITGTIFVPDNVEYENDFENQIYSFKIGDEAYSLIAGLWTDKKEIIVTDENFKSHELGFFEYEDAYFED*
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