Scaffold FwDRAFT

Basic Information
Taxon OID	3300000882 Open in IMG/M
Scaffold ID	FwDRAFT_10027805 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Columbia River
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000882 Open in IMG/M

Scaffold ID

FwDRAFT_10027805 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Columbia River

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6430
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6430

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (93.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River freshwater tidal region
Coordinates	Lat. (^o)	46.18	Long. (^o)	-123.18	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River freshwater tidal region

Coordinates

Lat. (^o)

46.18

Long. (^o)

-123.18

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1002780511	F008496	AGGAG	MEFTTSEPTFGIPATITPMSEQVAVTPAYDPNAEMLIKKGYYYGTPANAEYATVTADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENYDELGDHADEIAKIFSIDLSKEVEVEFNVTIKATISMPVNEDVSDLSVYDFDITLESNESKYEVQEFDADIDSIDEKY*
FwDRAFT_1002780514	F002502	GAG	MDKIQTPTVGSQFTTAKSGVTGTVQEIIKNQNGTLRIKLDVNGQDRWTTVK*
FwDRAFT_100278052	F007525	AGGA	MKTLEGVTVEYTQTIPTSKQMSEFYVWQEGAESYATVTYLDRVVEVERNGEMHLTLPYFINGELSDEGATQVRYSDELEAAGISDDIQLMQFLKTISNSGFEIYRMNPWWEVFAHNEDMGEVYDTFYEAIDAAIDHILDDRNW*
FwDRAFT_100278055	F030094	AGGA	MKLRGIFEGTFESVWSMEVPQAEWDKYLKEHPGIDETDSDDIQQMWDYFKSIGCYDEIDDTVDTDVVMTGIETYGVEVEIN*
FwDRAFT_100278056	F016662	AGGAG	MTYLVATTEVIYDEQDLIKMMLATGEYGIHGHPISHEAMVEFVKDQEWQIEHHLFLDNYDVPAQISIKDEDGTDLFFAKNKYEIK*
FwDRAFT_100278057	F043404	AGGA	MIDTDNPLLQTLADDFVDLHGCGGIELEQWETAYNFVKHFYHTEEMVQIIIRSKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold FwDRAFT_10027805

Overview

Ecosystem & Geography

Associated Families

Sequences