Scaffold FwDRAFT_10045101

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FwDRAFT_10045101

Scaffold FwDRAFT_10045101

Overview

Basic Information
Taxon OID	3300000882 Open in IMG/M
Scaffold ID	FwDRAFT_10045101 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Columbia River
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6140
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River freshwater tidal region
Coordinates	Lat. (^o)	46.18	Long. (^o)	-123.18	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051121	Metagenome / Metatranscriptome	144	N
F065788	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1004510110	F051121	N/A	MVRKIKNLRETLLVVFLMLWAIMMVFVVINLTGCSNPQTQFEKQVTTTTVDSVWIKKPGEINTLQFDPVYCAKTKDSGIISGRTEFHVGDTIKRIRYTHK*
FwDRAFT_100451014	F065788	N/A	MDLSNEQILQIIDFIVNEDNCDTGVFAKFISESNYYSIDEFSNLIKTTKRIFDLDRYDIDFLFHVYNDNYDLILKDNLNAENMVIPVKKNYDITTQCMYNKSGFEYYASEENIYSLKSIYWKYDNGSFYPNDGKLVDDDSSDYEMQEWEIYDSSIKNNVKESKEERLKKLLMMKEIVDRKIKELL*

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