NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FwDRAFT_10205403

Scaffold FwDRAFT_10205403


Overview

Basic Information
Taxon OID3300000882 Open in IMG/M
Scaffold IDFwDRAFT_10205403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Columbia River
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1874
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River freshwater tidal region
CoordinatesLat. (o)46.18Long. (o)-123.18Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047677Metagenome / Metatranscriptome149N
F063704Metagenome / Metatranscriptome129Y
F084221Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
FwDRAFT_102054032F047677AGGVKWLKSLLSAEGDASSKRVSAILALIVCINLSYIGTFTEYKCPEYMFDGLLLLAGGGLGLTVIESIFTKNKQNDTTDEGTN*
FwDRAFT_102054033F084221N/AMSNHQQQIAEGITGTISSILLSVPAWLLDVEFALKMFCLVLSGIASIYTIIKMSRKK*
FwDRAFT_102054036F063704N/AMIITKYRMITENGYIETLNEQEAIEWGNYETVTEEVSDENTQTQIS*
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