Scaffold AL16A1W_10115219

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold AL16A1W_10115219

Scaffold AL16A1W_10115219

Overview

Basic Information
Taxon OID	3300000887 Open in IMG/M
Scaffold ID	AL16A1W_10115219 Open in IMG/M
Source Dataset Name	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1528
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location Name	Axel Heiberg Island, Nunavut, Canada
Coordinates	Lat. (^o)	79.26	Long. (^o)	-90.46	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025185	Metagenome	203	Y
F079371	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
AL16A1W_101152191	F079371	AGGA	MPPVTRLARLVRIVTLPETRGVIVAAAHSQTLRDIRQRAVHDRRALVRDLGNPANAQHLVRSAARHPATRELASAGLMFLPLRYLPVGWAATWVAHRVLRRHLDPPAELQTSHPSGPPQG
AL16A1W_101152192	F025185	AGGAGG	MHVEELPSVNEVVSTLEEARQRVSDADLVDASRSALTDLVDASRSALTSVRQAVADGWPRRRRASRWPWVAGVILGMTVLGLVLLTLAFRRWSASRRASAGPDGVMGDVTPAPAMSAADETVDLVYPAEPDALDTAPLLDSGTEEAEADVDSRAIRERRGSTAVATRTSTGRPLSA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.