NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10214J12806_11068852

Scaffold JGI10214J12806_11068852


Overview

Basic Information
Taxon OID3300000891 Open in IMG/M
Scaffold IDJGI10214J12806_11068852 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin, Continuous corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)43.303333Long. (o)-89.334167Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018030Metagenome / Metatranscriptome237N
F020741Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
JGI10214J12806_110688522F020741N/AMAHFRMSLLLLSALIAQPAMAQLGAFSQSPGGDARAKTRGDGAQVECGPIGCRPLPPGCRQVRLGGRWLDNNGLQVVCDRKRN*
JGI10214J12806_110688523F018030GGAGMDAATSLDDTVRKAQDILWDALPPGAVRGSAVLKLRDLLWSPEVGAALAISPDNYLAFALRESRLTLVDTSAWPDKTLSALWTILDDPALNAALGIPQDRTLNAPRRNYPWR*
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