NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10214J12806_11546225

Scaffold JGI10214J12806_11546225


Overview

Basic Information
Taxon OID3300000891 Open in IMG/M
Scaffold IDJGI10214J12806_11546225 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin, Continuous corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)43.303333Long. (o)-89.334167Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021840Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
JGI10214J12806_115462251F021840AGGAGMPRFSNLKNSLLALVVFGIVAIAHGTAKADPISVCTGAGCSTTNVTGTIVAGNGTVTITLNNNLTNAQVISVIQNVSGVYFQVSGYNGGAVSLSGSNSTQSTNVDGSGNATLAGAVNPTGWAAGHSGSTITACVVCAFGVGPTAGPEQTIIGGTGSGAYANANGSIAGNNPHNPFLAGTVTF
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Institute for Fundamental Biomedical Research
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