NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OpTDRAFT_10003183

Scaffold OpTDRAFT_10003183


Overview

Basic Information
Taxon OID3300000928 Open in IMG/M
Scaffold IDOpTDRAFT_10003183 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 25 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7521
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040106Metagenome / Metatranscriptome162N
F042905Metagenome / Metatranscriptome157N
F060814Metagenome / Metatranscriptome132N
F094928Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
OpTDRAFT_100031833F060814AGGAGMPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASEVHQLESAKEFIKEITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCQFLKDNINLDTEIEIGIATNPHKFMSLDYMSNIQSKLKYLDENIDHEITYTFVVNIKDYGIDYHELHEHAVKCFDTILDFIPSVSRSHKANIILETLDKFNEYFNVLTRDSTMNNIMVDHSHAGMNYTVLNYKRGDWYLSP
OpTDRAFT_100031834F042905N/AMIVHLNKTHAGYYNYEENKSPINNDFLRTEINLDILHGCSQMCPGCFIPRKNLTNADHLTTLYKTLLEGSYYPDEIVVGPTDIFDAENFDEIMEHSSMKDLYGISAIGFLTTLNQPIEVIKEKLDKIWSLYEGIDRIPDIDFKIVLDINQYINKDIRMVDWYKKLALFEEGSVQLRVNWYEGIFDKISYNDLCQKVFDDFNAPIVITPSFLTDRNVRGKVDKHLKMFREDLINQNIDSKWRNLYTFFDSSFNGYGCQNYSFYNGKIYVNPFLYDAIIQRTPEFESRIDEPKLYENLDYAKTTDDCNKCEFLMSCAERNVHMYMKSRNIKGCVALKEYMHADN*
OpTDRAFT_100031837F040106GAGGMSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQQIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQEIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPIGRVDQMLNDILYYEEVMRKVKFFKENTPKQMDWSWTLQASNVVGKSIDKETYNRIIKRSVQDYETIVEMNPAFSRASNELVQRKNLFGWNEFLGRVIDEGNANETVMSMAHLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEEILDRKNQLIAKGINRSSKVKDCSTCQYKIACASRLVFEAQETLKIDGCVLNKDVLKHYNPYDWTWNDDATKKLGEAS*
OpTDRAFT_100031838F094928GAGGMVMRRSDVNSWVQSYGGGQLRTFDRTVGIYVNAYVRGTGITSYSRGQWHYHRFEYVNASNGVYNNYVDGGINAGNIIYPIDIIDTLEDLTRRTVDLIEGRMSNRTINAYYCHASCHSSCHSSRGRR*
OpTDRAFT_100031839F094928GAGGMPSYSSLNSTTQSYCGRQLRTFDRSVGFYINAYVYANGGQTSYSRGQWHYTRFEFVNASNSYYNNYLDGGIYTGNIIRSSQVQNSISRIVRRTVDLVEGRISNRTINAYYCHASCHSSCHSSRGRR*
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