Basic Information | |
---|---|
Taxon OID | 3300000928 Open in IMG/M |
Scaffold ID | OpTDRAFT_10003183 Open in IMG/M |
Source Dataset Name | Marine plume microbial communities from the Columbia River - 25 PSU |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7521 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Columbia River plume, coastal ocean | |||||||
Coordinates | Lat. (o) | 46.233 | Long. (o) | -124.16 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F040106 | Metagenome / Metatranscriptome | 162 | N |
F042905 | Metagenome / Metatranscriptome | 157 | N |
F060814 | Metagenome / Metatranscriptome | 132 | N |
F094928 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
OpTDRAFT_100031833 | F060814 | AGGAG | MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASEVHQLESAKEFIKEITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCQFLKDNINLDTEIEIGIATNPHKFMSLDYMSNIQSKLKYLDENIDHEITYTFVVNIKDYGIDYHELHEHAVKCFDTILDFIPSVSRSHKANIILETLDKFNEYFNVLTRDSTMNNIMVDHSHAGMNYTVLNYKRGDWYLSP |
OpTDRAFT_100031834 | F042905 | N/A | MIVHLNKTHAGYYNYEENKSPINNDFLRTEINLDILHGCSQMCPGCFIPRKNLTNADHLTTLYKTLLEGSYYPDEIVVGPTDIFDAENFDEIMEHSSMKDLYGISAIGFLTTLNQPIEVIKEKLDKIWSLYEGIDRIPDIDFKIVLDINQYINKDIRMVDWYKKLALFEEGSVQLRVNWYEGIFDKISYNDLCQKVFDDFNAPIVITPSFLTDRNVRGKVDKHLKMFREDLINQNIDSKWRNLYTFFDSSFNGYGCQNYSFYNGKIYVNPFLYDAIIQRTPEFESRIDEPKLYENLDYAKTTDDCNKCEFLMSCAERNVHMYMKSRNIKGCVALKEYMHADN* |
OpTDRAFT_100031837 | F040106 | GAGG | MSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQQIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQEIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPIGRVDQMLNDILYYEEVMRKVKFFKENTPKQMDWSWTLQASNVVGKSIDKETYNRIIKRSVQDYETIVEMNPAFSRASNELVQRKNLFGWNEFLGRVIDEGNANETVMSMAHLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEEILDRKNQLIAKGINRSSKVKDCSTCQYKIACASRLVFEAQETLKIDGCVLNKDVLKHYNPYDWTWNDDATKKLGEAS* |
OpTDRAFT_100031838 | F094928 | GAGG | MVMRRSDVNSWVQSYGGGQLRTFDRTVGIYVNAYVRGTGITSYSRGQWHYHRFEYVNASNGVYNNYVDGGINAGNIIYPIDIIDTLEDLTRRTVDLIEGRMSNRTINAYYCHASCHSSCHSSRGRR* |
OpTDRAFT_100031839 | F094928 | GAGG | MPSYSSLNSTTQSYCGRQLRTFDRSVGFYINAYVYANGGQTSYSRGQWHYTRFEFVNASNSYYNNYLDGGIYTGNIIRSSQVQNSISRIVRRTVDLVEGRISNRTINAYYCHASCHSSCHSSRGRR* |
⦗Top⦘ |