NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OpTDRAFT_10021573

Scaffold OpTDRAFT_10021573


Overview

Basic Information
Taxon OID3300000928 Open in IMG/M
Scaffold IDOpTDRAFT_10021573 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 25 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4382
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009636Metagenome / Metatranscriptome315Y
F019391Metagenome / Metatranscriptome230Y
F031710Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
OpTDRAFT_1002157315F009636GGAGMGYFYQDWKEKKMFVENNEGQFVMNFGEAEKSMIENLENAVINLTEGASDEKRSGVAYLEYLAECLKKGKLEVKWNIS*
OpTDRAFT_1002157317F019391GAGGMTNQETIFISANNGGLEIYKGAGNLIAGNIKTAKTFKYVMDTHNIDIDFDTIYYTSSMDFADEEGFAHYGDAKILAEEGFKLMEMTKAY*
OpTDRAFT_100215737F031710GGAGMTPFEQAFLATSFLAIFFYFGKYLGKQEKVEDIVEHTFNMLEKNNMIKVKKCEKTGEKEILPIDKTI*
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