Scaffold NpDRAFT_10060505

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NpDRAFT_10060505

Scaffold NpDRAFT_10060505

Overview

Basic Information
Taxon OID	3300000929 Open in IMG/M
Scaffold ID	NpDRAFT_10060505 Open in IMG/M
Source Dataset Name	Marine plume microbial communities from the Columbia River - 15 PSU
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6079
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Robiginitomaculaceae → Robiginitomaculum → unclassified Robiginitomaculum → Robiginitomaculum sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River plume, coastal ocean
Coordinates	Lat. (^o)	46.239	Long. (^o)	-124.161	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030566	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
NpDRAFT_1006050511	F030566	N/A	FFHRWMQKIVNYDTSAGPISAVDGLLPFEMGYKSDYATTIEIIVYSFQSESITYTYKMDGAYPIQVGNITEAWEAQGEIMTLPIGFTYDSLKVTGAKTGNVLDGASGANGLLSYLSTINTFAQAIRGLKRPRGIQDAINQFTNVSTILKSF*

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