NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY92_10003078

Scaffold BBAY92_10003078


Overview

Basic Information
Taxon OID3300000947 Open in IMG/M
Scaffold IDBBAY92_10003078 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4282
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → Porticoccus → unclassified Porticoccus → Porticoccus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052433Metagenome142Y
F073751Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
BBAY92_100030782F073751AGGMSKITWNLSSEKCFEIIQYTLIDILSENKTKSLNIDKLVELLNLRTKIYKLHNSKKYNSFSKYLKIEYKGVLNFIENYNFYGVVKAENEIIIKLYSNLVDLNDLKYTGKRLTKDSEWIMIDELGEEL*
BBAY92_100030785F052433N/AMDSSKYYPYNIPFYTDLNFIDVKFVNNEDHIINIFFVKGDTQGNLAALIFPHSERKYQFPESSIVAVVSDKKPHKYQCFIKLKDGMTYIYP*
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