NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY92_10094715

Scaffold BBAY92_10094715


Overview

Basic Information
Taxon OID3300000947 Open in IMG/M
Scaffold IDBBAY92_10094715 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)797
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023856Metagenome / Metatranscriptome208Y
F030067Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
BBAY92_100947151F023856GGAGMRCKACDRILEESEMTKKDANGDFLDLCNICLSAVATAGVDSETMEYYQYEVFTDDDKYDTLY*
BBAY92_100947154F030067AGGAGMAKESWEYWHDDYYDELEAEDYEGLDDCEAWKEEEQKIIDELIQRLYK*

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