NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY92_12257950

Scaffold BBAY92_12257950


Overview

Basic Information
Taxon OID3300000947 Open in IMG/M
Scaffold IDBBAY92_12257950 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040601Metagenome161Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
BBAY92_122579502F040601AGGMAIVNYVIKIIEPDREYLKTFAGIDLEQCKRDAQQYLWNCPEHTQYMYVATRLYNE*
BBAY92_122579504F046983GGAMKLPESFTKESTHQTLGVNTMSLLGFSLVWGHMLDIISLWFLPLTILSILAGFGNEVRKRS*
BBAY92_122579505F085562GAGMDEFTKKSTANMDPKVVNKAIKLIDKNPELKKIRSIKDGMAYSEINSGVNDQQYKDNYDKIEWGKNKKKPTFKVRVNGVVQNDEEE*
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