NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY77_12530553

Scaffold BBAY77_12530553


Overview

Basic Information
Taxon OID3300000948 Open in IMG/M
Scaffold IDBBAY77_12530553 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY77
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12793
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005352Metagenome / Metatranscriptome403Y
F025150Metagenome / Metatranscriptome203Y
F047922Metagenome / Metatranscriptome149Y
F065219Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
BBAY77_1253055323F047922GAGGMTPQEIVDHKNKWRMASYFTSHVHSDLRSEVTQWCKDHCFQWRYDIKHFTDIYGDTVRFELEEDFNAFNDWYKERFYG*
BBAY77_1253055324F005352GAGGMTHPALDKPYIQLICNPYEHHTSVNTRVTIDVMQKDLSRDDMLQVLEDFMKAMGYRFSNKESLCIEAYD*
BBAY77_1253055326F025150GGAGMINVQTEGRDISKYSSFIDECIMSLFPEDATYDIYFEVKKFVDKDGSHAGFCMGDDIESVISLATHWVYEDGEEIAYEPHELAANIAHELVHAKQFYRGQINMVDNVWKHNNVNIDCDTIDYEDLPWEVEAYAYEVILTDLLWENV*
BBAY77_125305535F065219GGAGMRYELSQCCNTGNWWIWKVEPCGYRSIVRTLSADLTIREANAYMDAYIEEMSNG*
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Institute for Fundamental Biomedical Research
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