NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11881J13070_1000322

Scaffold JGI11881J13070_1000322


Overview

Basic Information
Taxon OID3300000950 Open in IMG/M
Scaffold IDJGI11881J13070_1000322 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP0441
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5189
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameEast of Rio de Janeiro, Brazil, South Atlantic Ocean
CoordinatesLat. (o)-22.97Long. (o)-36.95Alt. (m)Depth (m)3906.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082562Metagenome113N
F085813Metagenome111N

Sequences

Protein IDFamilyRBSSequence
JGI11881J13070_10003222F082562N/AMKTIILGILITLSTNLFAQTNDSLKNYFLDIELSIIHPLLGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFLFTDIPNPQTILVLYAVPRVGYRIYLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*
JGI11881J13070_10003227F085813N/AMDQFEIIWILVTVIGALNYGFNAYQKGFRRLLKWDVISLIILDTLMFVPLSLIVGL*
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