NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11615J12901_10015073

Scaffold JGI11615J12901_10015073


Overview

Basic Information
Taxon OID3300000953 Open in IMG/M
Scaffold IDJGI11615J12901_10015073 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1194
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.211666Long. (o)-96.594768Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005031Metagenome / Metatranscriptome414Y
F030515Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
JGI11615J12901_100150732F005031AGGAGMRRGATAVLKWFSALYVVLIVIQVYLAGEGIFGLNVIKHSEDCDKHGANLAAAPCIGDTTTLDAHRALGFFLTLPGAVLFLVTALIAWHPNTRIRTVSIIVPILTFVQMILPGTGRWGAALHPVNAFLILGMYLWLFLTLRKEAPEVMTEPVAAEPTG*
JGI11615J12901_100150733F030515GGCGGVAVDTHPHLAMLRILYGACAAAHDAFRARDNPVDGKLVADLDAMLERTKGEIERLDADFAAPN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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