Scaffold JGI11615J12901_10447252

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11615J12901_10447252

Scaffold JGI11615J12901_10447252

Overview

Basic Information
Taxon OID	3300000953 Open in IMG/M
Scaffold ID	JGI11615J12901_10447252 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1834
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Kansas, USA
Coordinates	Lat. (^o)	39.211666	Long. (^o)	-96.594768	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104944	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11615J12901_104472522	F104944	AGGAGG	MKTLRLFTIIVLAVLVLSVWTPAPVYAKQSDKISTSTTFVVDLTKTKLARLRVNNRTGGTLRVVFSGDRGYSFSTAKQGKTTFESIIQPGKYIITVTASSCSGQLTYRRKVKSGTVSLPAFICRRR*

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