NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11615J12901_10920980

Scaffold JGI11615J12901_10920980


Overview

Basic Information
Taxon OID3300000953 Open in IMG/M
Scaffold IDJGI11615J12901_10920980 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)896
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.211666Long. (o)-96.594768Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001079Metagenome / Metatranscriptome785Y
F021376Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
JGI11615J12901_109209801F021376GAGLYIKHLTSLQFLTYVGFFAVVLAAMFKFVPGKAPPVRTEPYPEDELGAHDRKTAKYFVAGGFFLVLGSLHMAVKNLPWAAE
JGI11615J12901_109209802F000280AGAAGGMAAQEPDQERRPAPARPLVGYRDVGEDVRHSRSTMMRAWVILAVLMAFYVGWTLVIFFLEPGLR*
JGI11615J12901_109209803F001079AGAAGMAATETPIQSVLPYVSWSSLTIAAIPADAWPLVFGSMQALKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPEQLEAFLERGYTFERMLVDVAGITAQPTLVMEKVF*

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