NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11615J12901_11266699

Scaffold JGI11615J12901_11266699


Overview

Basic Information
Taxon OID3300000953 Open in IMG/M
Scaffold IDJGI11615J12901_11266699 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.211666Long. (o)-96.594768Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036223Metagenome / Metatranscriptome170Y
F040395Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
JGI11615J12901_112666991F036223GGAGGMDLPDALEQLKSATHSLKLFLSWVESLTEDQLREMSNDNWMALFSAGHDHEERAIELDRELTRGREAR
JGI11615J12901_112666992F040395GGAGVLGVIGAGAGIPPEMSNATSWSMAGSFLLLLGYVLAFVIAVGLVAWVDNKLSSRRLFREIYRELGIGRGPSG*

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