Basic Information | |
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Taxon OID | 3300000956 Open in IMG/M |
Scaffold ID | JGI10216J12902_101816188 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1847 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa) |
Source Dataset Sampling Location | ||||||||
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Location Name | Kansas, USA | |||||||
Coordinates | Lat. (o) | 39.214012 | Long. (o) | -96.585283 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F082323 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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JGI10216J12902_1018161881 | F082323 | GGAGG | MRQRFSLSWIALTLTLWLGVGSVLAHITPPVVLLSEQDAVRGMTGGATKFFVREVRLTAEERGTIRQQWGWQAEDELYRFYLGRDAAEQLVAAVIFLTEFTIHGPVRVAVGLNPDGTVKDAKVVELTEETLPWLQVLLNQNLVQDYIGRDSRGNFALGGRFAAAQLDSMPQFYGQIVTSLMQRAAILFEVTVLKRTGKV* |
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