NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10216J12902_104665146

Scaffold JGI10216J12902_104665146


Overview

Basic Information
Taxon OID3300000956 Open in IMG/M
Scaffold IDJGI10216J12902_104665146 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3465
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.214012Long. (o)-96.585283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000587Metagenome / Metatranscriptome1007Y
F087833Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
JGI10216J12902_1046651463F000587AGGAGMKIIASALIALSVVAGIAAPASAFDAKSFYEQQDRQAN*
JGI10216J12902_1046651468F087833AGGMEPHMPLDDADRKRIVQSIRTYIARERISRDEFARRTKLGKSTVDKLVVGLFSEKTILQIEAQAKISLLGGGPVVEAAGDDFGRYTREDTKNYIGDYVFARPSFHEDGLIHAFHMEILWDRDVSALVVKEVAADMQMPLQLGKIYIPRASMHMFILSNEQGWLKKVILSQIDVYKRMKGIMLTMGHAFANVYTPVAMPVMMNKYDKVDASMVGKIDPRSPMYEEYNQDLLAVEQNQFARWIRLKQI*
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