NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY93_10005782

Scaffold BBAY93_10005782


Overview

Basic Information
Taxon OID3300000973 Open in IMG/M
Scaffold IDBBAY93_10005782 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3270
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049283Metagenome / Metatranscriptome147N
F054412Metagenome / Metatranscriptome140N
F072845Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
BBAY93_100057821F072845N/AMSGEKLTINDDGSVTEIEFDDYDFGGGYTYHPSPYVLPASEDIATSNIFSMSHDIDGKMRITGDDADIEINGISLKDTLHNLQERMAILEPNPALEAEFKELRDIRQKYIQLEKNLLEKKQMWD
BBAY93_100057826F049283AGGMKDVQKVVHTAYDIWAAAVYAQRINKGYYKEDEFNAEGECVREANRTVARNALALGGKISVEDRCKGGEIRKFISSRLMVTAITRKLSDFQQSLSRAVELDEFVVPQDRMLIGIVNSQIAQYERAMREEQLTKDYVYGTYGKIKERLDVELKPVSRFWLTDWGTFRYNAITKDGYKTSFYYRDKLEIGDAVKVRGTVTKHTNDTTTINRVKVI*
BBAY93_100057829F054412N/ADILTVAREFAPDDPLLQDVMIMQERQQTIFAHDPTTEITLKANVFEYALGKEKLNIRPTDYKIHRAYPPKGTDPTWVVWMNSTRKNKKWQARVEYSTEKTTLFLEKG*
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Institute for Fundamental Biomedical Research
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