NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY93_10042005

Scaffold BBAY93_10042005


Overview

Basic Information
Taxon OID3300000973 Open in IMG/M
Scaffold IDBBAY93_10042005 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F007647Metagenome / Metatranscriptome347Y
F008755Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
BBAY93_100420051F008755N/AKAKDARFFRLGFNKVAKENNFNVMNVGVTPTPSRSKTSKGSMNINVKSKQKNPSPLATDEPTSSIKPPTEQEKKFGALPQTPQLENQQAQATYYSAQAVGQIFETIFNIVFTRLGAEGLTQNERIALGEAWTPIFNEYLTGENSKWIMPAIVTMPIILTRVVQVQKIKKEKELAERYGLDEVPKEPQPKKKSAWENMSHGQNKTNKG*
BBAY93_100420052F001594GGAGMDKTKLTKDEYLDSLDPDNLNLEKSDLINFCHGCIDEWKKNKIGNFKYIVAMELMIGAVRITPEDVMKTVWKKILVWFWDLQYKNALAENEGMLRRFREIGSG*
BBAY93_100420053F007647AGGAGGLDQAKVNNVVNSFFNSLKSNEDKMLETGLTHNTTVELLHQATLQLVQENPKRFEQYVKFFEFGCMYLQDESDEIPEVENNG*
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