NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY93_10072956

Scaffold BBAY93_10072956


Overview

Basic Information
Taxon OID3300000973 Open in IMG/M
Scaffold IDBBAY93_10072956 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055188Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
BBAY93_100729562F055188N/AMKKVILTLTAIATLFSCTTEEMAQSDSQDLGFNRMPIFVGEYLNSQTFINGELSDTCDTTWSFTATSVFVKRVESCDEAAQGQTLPYTFDDTTLYIGQVTNTGIVQIEYPYTEDADGNLTLTLLTGSYELVYKLTR*
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