NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY70_12479908

Scaffold BBAY70_12479908


Overview

Basic Information
Taxon OID3300000977 Open in IMG/M
Scaffold IDBBAY70_12479908 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY70
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052608Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
BBAY70_124799081F052608N/AKIFGDSKSTIENLYKSIQENYDIMTMTLPDDKKDFVKKEVKAITEKLECVGKFEEKVKKIEDFVENLKEFDNSLKGMDKWMTDSEQQLKDIKDSSDKMTPEDRVSYTMELQEDVGSKVRLIEELIKKEEGLLPQGDKVPQDAEDFKIELKRIHDFVKELQKKVMTECDNFSEDVKYWAEYKT
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