Scaffold JGI12020J13220_1004516

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12020J13220_1004516

Scaffold JGI12020J13220_1004516

Overview

Basic Information
Taxon OID	3300001058 Open in IMG/M
Scaffold ID	JGI12020J13220_1004516 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Indian Ocean - MP0901
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1436
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	East of Durban, South Africa, South Indian Ocean
Coordinates	Lat. (^o)	-33.55	Long. (^o)	39.89	Alt. (m)		Depth (m)	4002.12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012125	Metagenome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12020J13220_10045164	F012125	N/A	MSDTRYSVMHPDGGKXSFFSAGKPKNLPRFYFLVLAGIFLXIFMFLWFD*

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