NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12648J13191_1000038

Scaffold JGI12648J13191_1000038


Overview

Basic Information
Taxon OID3300001084 Open in IMG/M
Scaffold IDJGI12648J13191_1000038 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16100
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054209Metagenome / Metatranscriptome140Y
F089220Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
JGI12648J13191_100003813F089220AGGAGMTIMTAVKTAMITVALGFACLLPATARAQSDVSPDEFAFSGTETATAQPVHAARTKLTKAEFEGKVSLPYNVKCGSKNLKAGQYSLSVKSEEGARVVTINGSGENVNIHMREVLTNRWANQSALLVGKSSEGRRLEGVYVEGLNAMLYPDTNPNGSHARTERLPIS*
JGI12648J13191_10000385F054209AGGAGGMVGNNWRALYKAAILETDPVKLELRVKAVEDAIRARQALDGQVSSGERAEMKEALDSLGILKIEWKHCKKAAARQRTVEA*
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