Scaffold JGI12104J13512_1012258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12104J13512_1012258

Scaffold JGI12104J13512_1012258

Overview

Basic Information
Taxon OID	3300001095 Open in IMG/M
Scaffold ID	JGI12104J13512_1012258 Open in IMG/M
Source Dataset Name	Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Biofilm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2483
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Terephthalate → Wastewater → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Source Dataset Sampling Location
Location Name	National University of Singapore, Singapore
Coordinates	Lat. (^o)	1.29973	Long. (^o)	103.771791	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041848	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12104J13512_10122582	F041848	GGAG	MTYPSETVTAKQYSTAVAVRGALLISIVSVAHSFVHLRIGAVGARNLEVERLNLGEFVQFEGADGALYEVRLLAVEGFDTATFLVTRIK*

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