Basic Information | |
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Taxon OID | 3300001138 Open in IMG/M |
Scaffold ID | JGI12282J13277_10034 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 817 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
Source Dataset Sampling Location | ||||||||
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Location Name | Manhattan, Kansas, USA | |||||||
Coordinates | Lat. (o) | 39.070856 | Long. (o) | -96.582821 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F079246 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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JGI12282J13277_100341 | F079246 | N/A | MLRPKSRVSAVTPKIILLLLSYLFLVSAAIFGLVGSYRVDVLRTDLAKANAARDAAEHRETEFKTREAAVAGAEAKIAEAENKATKAQTELLTLQNEKAELQSKLEGSRNEIAALQKRVGEAG |
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