Scaffold JGI10220J13317_10006214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI10220J13317_10006214

Scaffold JGI10220J13317_10006214

Overview

Basic Information
Taxon OID	3300001139 Open in IMG/M
Scaffold ID	JGI10220J13317_10006214 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1798
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Iowa, USA
Coordinates	Lat. (^o)	43.303333	Long. (^o)	-89.3325	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007597	Metagenome / Metatranscriptome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10220J13317_100062143	F007597	AGGAG	MIKMLTMALIACAMTISPALAQMQVPGVSSMLPDKTMLLEQGKKLVADLTSMKSSGKLDAADTQKVDSMLPKANALNTELAKPQLEPSKLTQLAGQLGDLQKQAGALQGKMK*

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