NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12713J13577_1000004

Scaffold JGI12713J13577_1000004


Overview

Basic Information
Taxon OID3300001151 Open in IMG/M
Scaffold IDJGI12713J13577_1000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153724
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)118 (77.63%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045882Metagenome / Metatranscriptome152N
F053422Metagenome / Metatranscriptome141Y
F075149Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
JGI12713J13577_1000004147F075149AGGMRKAAAAFALFIFLALAVPAKKHDSAAKTYDKQGVAIAVPTHYVSTRRVDSIGGHYDWDCDADAGKLSCTDNPVPYLTYVRLTPDGPMYLAVRFTDKQHDAFAPAVLASLVQEKDTHFNYRDYLTTAEGLRVICLPYATADKKGKPKSGETCYTIDTENPRQMRP*
JGI12713J13577_100000434F045882AGGAGMKPLSGKLALYTLLALTIGAFAANAQISTQIVFRMSRPFVVGNTTFPEGNFVIKEVPGAAKLTLEFSNPRGGASTKLEAQSLPADPTIHAAEIVFNKYTNLMALSQVFPGPGKHGYQLVPGQAERDAAKTEKPLRQTIPAHGS*
JGI12713J13577_100000438F053422GGAMNLRELVEKYVHAAGGYGKSVPISSLDLSHEETERIFDMLDEDYHISRFFHFSKAAGQSFQISGFAQTHISIDAEIQEIL*
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