Scaffold JGI12713J13577

Basic Information
Taxon OID	3300001151 Open in IMG/M
Scaffold ID	JGI12713J13577_1000005 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001151 Open in IMG/M

Scaffold ID

JGI12713J13577_1000005 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	149073
Total Scaffold Genes	128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	97 (75.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

149073

Total Scaffold Genes

128 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

97 (75.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025790	Metagenome / Metatranscriptome	200	Y
F040745	Metagenome / Metatranscriptome	161	Y
F042993	Metagenome / Metatranscriptome	157	Y
F046505	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12713J13577_1000005124	F025790	GAGG	VSKTSVLRFTLLFLSGSALLVAGAPSSQPRASAAPVAFVGVSPGDEPATSTFTGKILSQNGVRYILRDDANEVWYHLDDQAQAQKYFGKNVVVTGVLDGRSDMIRVRNIADAN*
JGI12713J13577_100000562	F042993	GGAGG	MESGIGFAAVAGAIFISYAVALGLEWLSLILLLRLMPARPAPQTLAQRVAAMAQSRGGGESERRAA*
JGI12713J13577_10000059	F040745	AGGAGG	MGETTNQIEWEIAQKRSELSDNLIELKQRAKAAVDWRSQVEARPGTMLAVAFTGGIVLSALFSALRGPAKVYAQRPSGNAVEYDSPISRTSARSPSKLTTATRNNLDVLGGALLGIVATRTASILEGILPGFQREFERARGSQG*
JGI12713J13577_100000592	F046505	AGGAGG	MRAAALRGSARAMGSEFWETGNPYQNELADAFTIAPNSIVHTLRWPNTHAQIFSFQEVHHLSKGRTSYLYWAGCRFSDHSFPKFDLKPTRTASFLRRGWWRKVSLPGQIEFESRYTLTGENRALLEQFFTPGRCAAILSREWPRGISLKAGGHWLVAHRETFFHATSESDSETSVAKEIQDVSSLVTGMLPVAEALTDSQLVEQSHRYMRLSQESLKTGRTWWNQLAFLLLAIVIGVSILLSVGLLGPWWGRFDNMILKTEARRYLFAAIFISASFVVGEWLVRVYRKTKQRAATRLEAQYSVLPN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12713J13577_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences