NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12713J13577_1000009

Scaffold JGI12713J13577_1000009


Overview

Basic Information
Taxon OID3300001151 Open in IMG/M
Scaffold IDJGI12713J13577_1000009 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114288
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (71.30%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040747Metagenome / Metatranscriptome161N
F066963Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
JGI12713J13577_100000961F066963GAGGMHTFEYAITTKASPSLTWEIYTNWKMWHTFANIYGRLHWQHGEPWSIGSRMEIEILKPVKVVIDHLIVNCRRGRDLGWIDRALGITLHQWVEFEEHHSGGTYVRTWGEIKPARVAVAGRTAEYLVGVFTETWYENFRSLCDEFAEVGV*
JGI12713J13577_100000990F040747GGGGGMSNLFTTATTVTTEQDAQVEKRLWQAVIVSTIQEWISGPLRYKRIAEEYLFQDRSDFPMVCQSAGLDVDKLRQQLTRLRTQANPLGKIAWE*
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