Basic Information | |
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Taxon OID | 3300001151 Open in IMG/M |
Scaffold ID | JGI12713J13577_1000033 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 47720 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (77.78%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F056776 | Metagenome / Metatranscriptome | 137 | Y |
F063893 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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JGI12713J13577_100003340 | F056776 | GGCGG | MLVAGAVAAQDRTAELRARFQNEPDPVRKARLVEPLANAEFRDIHAKIDAGDLEAAAEIAGRVRDEARASKKSLDTKSRDVEAHPEGYKQLEISVRESIRRLDDIMVSLAKDEQKPLAEVRVELETLNRELIHQLFPKRPEGSPAAPAPDADKPKN* |
JGI12713J13577_10000338 | F063893 | AGGAG | MSKLWEKISTIGQNAPPEKGEAKEAIAQPGEKVMHRASGAHGVVTAVETIGETLTLSVECTNGRMLRGLDRKEFAFVGEDGYTAPPVQAAPAPVGQAAEPMPKMEGAISSESILEKLS* |
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