NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11823J13286_1004501

Scaffold JGI11823J13286_1004501


Overview

Basic Information
Taxon OID3300001164 Open in IMG/M
Scaffold IDJGI11823J13286_1004501 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089344Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
JGI11823J13286_10045011F089344N/AVIRSHLFLLFANALGNDSSVIEKSFNFGVGIPLSALLLILALRSSGENRSAHLGFAVCALTFTLGATVEQIAICLGQSTSSLTVVLAGNLAFCAAAAWPLTILGLWAQGPYPSIWRQQLGRAVLALAGLAAVLLSFGHVTGLLPQKIVQLRDVGSRLGRIDLGHDFAAYNGVFFLWIGALVFLPGRLRGRLSWLSTTALLVGITLATIHVAEEHIANPPAWLHSLVLFSKQFSILLIVAGGLFGFSRFRFSDIFAQKGLRILLGALLALGSSFLARGIFLSPLSENEPSR
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