NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12673J13574_1009686

Scaffold JGI12673J13574_1009686


Overview

Basic Information
Taxon OID3300001167 Open in IMG/M
Scaffold IDJGI12673J13574_1009686 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004729Metagenome / Metatranscriptome426Y
F006950Metagenome / Metatranscriptome361Y

Sequences

Protein IDFamilyRBSSequence
JGI12673J13574_10096861F006950GGAGMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVNRAAKLQQQSEEQARRELTQPIAINPGDPRVKTKLFWASDTIESTLVPVTVELPLSNDPVLRSKQVLNTLLAGPVDAELRTLPPDALLLAFYLLPDGTAI
JGI12673J13574_10096862F004729N/AVRQLRTTAAPAIAVEISSVTVEDRADLDRMAPGVADAIARGAAAFKPSYVVPNTRGALP*

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