NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C688J13580_1005069

Scaffold C688J13580_1005069


Overview

Basic Information
Taxon OID3300001205 Open in IMG/M
Scaffold IDC688J13580_1005069 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1325
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameHopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010555Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
C688J13580_10050693F010555GGAGMKGRSIIGVLVIAVVALAALAPTAAADQPVTTVTTVDHSFTLPAGPNFCPFPIAGHSQGTLRETVYSNGKDVTHAVDFHITYTNPANGKTLSTVLAGPFIVSPNADGTVTVTINGNDGHLTAPGQGSIFADVGKLVYIADPSDVFTPLSIVKSTGHQDPNQFPATCEGLS*
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