Scaffold C688J13580_1049388

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold C688J13580_1049388

Scaffold C688J13580_1049388

Overview

Basic Information
Taxon OID	3300001205 Open in IMG/M
Scaffold ID	C688J13580_1049388 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	567
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location Name	Hopland, California
Coordinates	Lat. (^o)	38.99297339	Long. (^o)	-123.0674491	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015897	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
C688J13580_10493882	F015897	GGAG	MGRSAFSGVVSCVLALLLPLCSFAADSNAAMLYTNGAAWINGAHVPRSSSAIFFGDLLQTRSDSIAKINQPGSTITVFADSLIKFQGDSLDIEHGGVTVSTGRGVSTTAG

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