Scaffold B570J13895

Basic Information
Taxon OID	3300001274 Open in IMG/M
Scaffold ID	B570J13895_1001945 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001274 Open in IMG/M

Scaffold ID

B570J13895_1001945 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2787
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

2787

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, WI

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F014121	Metagenome / Metatranscriptome	265	Y
F017818	Metagenome / Metatranscriptome	238	Y
F018913	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F048267	Metagenome / Metatranscriptome	148	Y
F074911	Metagenome / Metatranscriptome	119	N
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_100194510	F014121	GGAG	MTDAAYKVWEAFKSELIVEPTDDMKEALASSIRVISSIIHRDGVLANEPWLTHTAQELNEIADELEAL*
B570J13895_100194511	F074911	GGAGG	MILDEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYFDG*
B570J13895_100194512	F032252	N/A	MKLYRYKKDGHLYTLYKNILRFPYYTLIAIPYFPNQGILAKSNWMKKRISMKDFEVVAER
B570J13895_100194513	F048267	AGGTGG	MTNEEWETALKNMNEGVKKWVDEEIDKIKYNIIKNIIDKELK*
B570J13895_100194514	F008943	AGGA	MKNFDEVTLAIFAFFFVIIVAAGAITYEDQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGDV
B570J13895_10019454	F017818	N/A	MMNKDAYYDWIAENDNYPEHSHKWIVGLYNKYEGVEALHRYFGPFETQNEARIFASNYKDKYTKPGFISSVRVFPLCEVL*
B570J13895_10019458	F090316	GAGG	MPDDLQREEEILLKALKEHKEKKSQEPIVKPQDDTSNILPAVIAAVL*
B570J13895_10019459	F018913	N/A	MTNKQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGQNPVDFKDELNVMYVLGYDDCLKDIDGIIDELELL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J13895_1001945

Overview

Ecosystem & Geography

Associated Families

Sequences