NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J14230_10033043

Scaffold B570J14230_10033043


Overview

Basic Information
Taxon OID3300001282 Open in IMG/M
Scaffold IDB570J14230_10033043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1821
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F031460Metagenome / Metatranscriptome182Y
F053253Metagenome141Y
F084156Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
B570J14230_100330432F031460AGAAGMAKVINEVELHLQMWSTVTLSAEEIQDIYPEFADMVDFDDTDELEQAIQDHMDMNYLDHIQYADGALDECRIDFQYEDDGSE*
B570J14230_100330435F053253GGALPRLIHFMLERDIMDFDLDTPISKILTDMLDKVEGHVGDCDCVNCNSLEVLAYMIKVEE*
B570J14230_100330436F084156GAGMLCPMVYENRNTIMVTDLCWYDTKQGDNCQWECSDIPGSFYCKNCNGLRVWNRFAQAYSFYVREGHYGF*
B570J14230_100330437F022399AGGTGGMGIKYQSIYSKNGLEVFVNPEDYWADYKVRLNGYHAKTFKGETAWMDVTRFVHDQAMEFWDFNTDGIHRQWQQDIMAELESRFANE*
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