NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C688J14111_10031452

Scaffold C688J14111_10031452


Overview

Basic Information
Taxon OID3300001305 Open in IMG/M
Scaffold IDC688J14111_10031452 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1581
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameUSA: Hopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009441Metagenome318Y
F070283Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
C688J14111_100314521F070283N/AATAGSTSPDLSPSQLGAHMTGRPSVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTAHGIRFSVVDRIGGIEWACPKAAGT*
C688J14111_100314523F009441N/AMTAVQRVIVLIVGAVALVAGPARAQRAARAEDFLGVTRCDSGQVVTEIREDVQRSDLRAEVEAHEAVHRQQAAAYGGCEAFLASLTTARRIIESELPAYCAQWKVAVARGADSEATRVDYAWRISAQSGAMENRLDIARRLRDECG*
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