NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCLOrf001_1001894

Scaffold LCLOrf001_1001894


Overview

Basic Information
Taxon OID3300001325 Open in IMG/M
Scaffold IDLCLOrf001_1001894 Open in IMG/M
Source Dataset NameMarine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3298
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.351508Long. (o)38.078207Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055414Metagenome138Y
F080862Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
LCLOrf001_10018947F055414AGGAGGMSNSHVSIELIVDGMPYIFQVDATDGSQTELTNWASGRGIGDTFSRGSTIQMARGAYLENYAVGGLQLLDEQGSVAFQFPAYNLESQNAGPHYPVNCFVGLNYQLVVTTSASLA*
LCLOrf001_10018948F080862GAGGMTTQNVTGMLYTTGPKGKLIVPLETTITDGSDKSEVKTDSTFTVSSMSIGIYAERQTLMSGWVSAKTGIIAAAIYNNGIVRAVVPITSRTSQASGCSDMVIMNNIVLNPGDTLNVTTYA*
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Institute for Fundamental Biomedical Research
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