NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold A21PFW6_1004906

Scaffold A21PFW6_1004906


Overview

Basic Information
Taxon OID3300001333 Open in IMG/M
Scaffold IDA21PFW6_1004906 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3779
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005789Metagenome / Metatranscriptome390Y
F032367Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
A21PFW6_10049066F005789N/AMEGLMATAIALDASPLNVLRSMRGSIVDARIAYPEVLHVEIKDSAGELWHLATQDAEWSPSDPAELVGRTVVDADIHEGTGELCCKLSDGSLLDVKPAASEAEGDPPNWELITPDGVVLEFGPGVRWQIDSADSRASSRA*
A21PFW6_10049067F032367GGAMSRKRDIKQFRQACKEAGLTVRERYEASEALHAEKQSGNAQGDMSYGELLAWLRQWKG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.