NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A21PFW6_1095393

Scaffold A21PFW6_1095393


Overview

Basic Information
Taxon OID3300001333 Open in IMG/M
Scaffold IDA21PFW6_1095393 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005031Metagenome / Metatranscriptome414Y
F047579Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
A21PFW6_10953931F005031AGGAGMRRRATGVLKWFSALYVVLIVIQVYLAGEGIFGLNVIKNSDDCDKKGFHTITAHCAGNSKTLDAHRALGFFLTLPGALLFLIVALVAWHANKRIRTISIVAPILTFVQMILPGTGRWGGALHPVNAILILALYGWLFHTLRKESPEVEAAPVAAPSG*
A21PFW6_10953932F047579N/AVDFTADLPADAAAAPRAPVTSDKIARLLREIEALIADDEAADRQVTGGWRTFADILAAAHVHTWDAYSVDLSADAESFRHLSRREQDAVKRVFGTIYRAESIVDDWMDRIVAALPREPGYDSMRAALLT
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