Basic Information | |
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Taxon OID | 3300001333 Open in IMG/M |
Scaffold ID | A21PFW6_1095393 Open in IMG/M |
Source Dataset Name | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Tennessee |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1067 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars) |
Source Dataset Sampling Location | ||||||||
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Location Name | Axel Heiberg Island, Nunavut, Canada | |||||||
Coordinates | Lat. (o) | 79.26 | Long. (o) | -90.46 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005031 | Metagenome / Metatranscriptome | 414 | Y |
F047579 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
A21PFW6_10953931 | F005031 | AGGAG | MRRRATGVLKWFSALYVVLIVIQVYLAGEGIFGLNVIKNSDDCDKKGFHTITAHCAGNSKTLDAHRALGFFLTLPGALLFLIVALVAWHANKRIRTISIVAPILTFVQMILPGTGRWGGALHPVNAILILALYGWLFHTLRKESPEVEAAPVAAPSG* |
A21PFW6_10953932 | F047579 | N/A | VDFTADLPADAAAAPRAPVTSDKIARLLREIEALIADDEAADRQVTGGWRTFADILAAAHVHTWDAYSVDLSADAESFRHLSRREQDAVKRVFGTIYRAESIVDDWMDRIVAALPREPGYDSMRAALLT |
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