NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ML8_10014699

Scaffold ML8_10014699


Overview

Basic Information
Taxon OID3300001335 Open in IMG/M
Scaffold IDML8_10014699 Open in IMG/M
Source Dataset NameWetlands benthic microbial communities from British Columbia, Canada - ML8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7155
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064414Metagenome128Y
F077915Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
ML8_1001469911F064414GAGGMGIGDMFAKIGIGGSGGGSLIINSLYMLVGALILLGCIGGLWWFLKKRKAYNIKVEVKIPRNIRQVKYKDGSIRVIGTLNKEWAKGFYNAKQGVVYIKRKGKKPVPMKPFDIKQYLSTGNILTVIQIGIEDYRPVLDESYIEVIDSETGEEGALIRAKIDTSESKSWKNSFEREAKLTYSIKNWISEHGGLVAMGLVLMMNLIGFAVVISRMPK*
ML8_100146993F077915AGGAGMSYYTTPTGNETNGLYELFKFTSNNATNGLFWPIMLLVIWVVSFLAFKNYSTSRAWTFASFFCSILGIFLAVMDYISPKWMYLTIVMTVVGFVWLKLETR*
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