Scaffold ML8_10021749

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ML8_10021749

Scaffold ML8_10021749

Overview

Basic Information
Taxon OID	3300001335 Open in IMG/M
Scaffold ID	ML8_10021749 Open in IMG/M
Source Dataset Name	Wetlands benthic microbial communities from British Columbia, Canada - ML8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2924
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-119.583333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065740	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
ML8_100217493	F065740	AGAAGG	MSAFAFVNYARFMENSSTATAYAYQNFSIGTARSYAGVTYNFLPFAISTGAGSKGGDRSEAVLGAGTNDISVNIFAEAVQSRWLLELKTVSLDITDFSDDALIRSELWRVASYDMDTEKVLLKLTSPLDAVRSDVPRRVLSTELVGALPSSGSLVVS*

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