Basic Information | |
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Taxon OID | 3300001344 Open in IMG/M |
Scaffold ID | JGI20152J14361_10009771 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4294 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018549 | Metagenome / Metatranscriptome | 234 | Y |
F087221 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI20152J14361_100097712 | F087221 | AGGAG | MSTNIKNLIDRTYREYLEPMEDMVSYTVLSGTLSTSDTSVGFNGDLLSIEEEDALDAGTIIEIGQELMICTELNAVTNSITVTRAARGTTATTHDAGDVIKITPQFPRVNVFNAVKDQIENLYPTLYAVETQTISSAVGYVALVGADDNRIVAPLKAVSQYQELDAGNQTTVQFRGVAMELIDVPTTVTASGKVVQFSGVSTGVNVHCTFKKKFGEVKDYDSDGDAEDTTLAEIGLETEYEPIIMAGVAAQMIAGKDIPTYTSDYITEQMAVTNYPVNSSSNIRNSLLQYQQVLINQARKDLRARYPEPVSLNSVVYPSA* |
JGI20152J14361_100097715 | F018549 | AGGAG | MSEEITNETDVQSTPEDKNWKAIREENKALKDELAQFQVKERDTLFQEIGLDRTKGIGKAADQMYEGDLAADALKAFVTEEFGEDVFGQQDSFRNTVNAGQERLDNLASQAQAVNANTSVQEQIAEAQKSGRVRDSIASKMQALDELKEK* |
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