NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20152J14361_10028028

Scaffold JGI20152J14361_10028028


Overview

Basic Information
Taxon OID3300001344 Open in IMG/M
Scaffold IDJGI20152J14361_10028028 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1897
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026009Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
JGI20152J14361_100280283F026009GGAGGMASLGGLDVAYGSNLQLVRTNVLIIETDATTTKAMAENVHSVASRKYPAAVRPDFTCFXADGDVDATGYATALTDIVENNILKDINAVPMAGSQYDATDANNRGLVWEGILNVGMAQINANDTMTADDLFTDASPAGIETDEMQGFPHLLQAQLMVAQFASDLTTLAGNHGVRTLDLEPLLDDSGIIGGTKVTDGLDAITESSTAAELNDGIAGAGALVTILAVGRIA*
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