Basic Information | |
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Taxon OID | 3300001346 Open in IMG/M |
Scaffold ID | JGI20151J14362_10002630 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12581 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F043681 | Metagenome / Metatranscriptome | 156 | Y |
F044800 | Metagenome / Metatranscriptome | 154 | Y |
F054892 | Metagenome / Metatranscriptome | 139 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI20151J14362_1000263012 | F054892 | GGAG | MPEEIKQEEMKIVLEDGKEVSFSDLSDEQKILVNHLRDLDMKMGRLNFEAQQLQAAKNAFSKELNDSFEEVEEDA* |
JGI20151J14362_100026307 | F043681 | AGGA | MAISFNNITYDKIMIPLRDKLRTEFAGGMPIYFDNQHRQVGNKSLRIYPVAQTLQDKRTRSYINLYEIEMDYVLNTNRSNEKALDEMYKDVTRIETILFNNSNGGDIPYFYAGMPTIDHNIDTDIPNALVSRISVPVLYEEVHERFVRFITSNDNFFVTSDGSFYIVRS* |
JGI20151J14362_100026308 | F044800 | AGG | MATASTNAWKVNVEETIQAGIRNEFFSSLPVFRSRDFQHRGNQFAILRGNNSDPQSTMYAVIADTYNLTLEFYMLDRKRNDTTVKRFFSQVSRIEETFYSLLEIDPLFNVIINGIDYSDDVEFNGYRKATFDMTVRNVR* |
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